MICROBIAL PROCESS DEVELOPMENT

BactoBox®

An essential tool for data‑driven process development

Top view of BactoBox device
106 106 108 108 1010 1010 1 : 1 BACTOBOX CELLS/ML CFU/ML

Six species in active growth. Jordal et al. 2025.

THE PROBLEM

Change a process condition, and optical density means something else

  • Medium
  • Temperature
  • pH
  • Feed rate
  • Induction
  • Scale
  • Strain

Example: across four media, the medium with the highest optical density does not have the most cells.

OD600

  • CD medium19.6
  • Terrific broth13.3
  • TSB11.1
  • LB4.9

cells/mL

  • CD medium3.2 × 1010
  • Terrific broth3.7 × 1010
  • TSB1.0 × 1010
  • LB1.3 × 1010

E. coli, shake flasks, read at 28 h. SBT Instruments data.

THE SOLUTION

Measure cells/mL directly

  1. 1Take a sample

    From flask or bioreactor

  2. 2Dilute into range

    Ready-made dilution vials

  3. 3Measure

    About two minutes

Decisions that get sharper

Media screening

Rank media and carbon sources on cells, not turbidity.

Harvest timing

See when cell division actually stops.

Induction points

Induce on a cell count and cell state that carries across media and scale.

End of fermentation

Read cells against CFU to see if the process has headroom.

Slow growers

Follow Mycoplasma and other slow organisms without plates.

Cell size

See how the cells are doing, not only how many there are.

A clear broth and an opaque, particulate medium, each with a matching cuvette

It works where OD cannot

In opaque, coloured or particulate media, OD gives no usable signal. BactoBox still counts the cells.

Media that defeat optical density →

From the first shortlist to the final process

Broad screening

96-well plates

Shortlist comparisons

Shake flasks

Scale-up

Bioreactor

Process decisions

Harvest, induction, feed

BactoBox